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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67334995_67345328_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67334995 - 67345328
Intron Length:
10334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
MQNATSFGYFKHTIAWI
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
83.7
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.8
77.2
36.2
Minor 5ss
40.7
-1
3.1
56.6
42.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
MFAP3L
Ensembl Gene ID:
ENSAPLG00000004242
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004342
67330697 - 67345743
15047