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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67378792_67379448_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67378792 - 67379448
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGATTT
5'SS Class:
weak_major
3'SS Sequence:
CACTTTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
ATCACTTTTACT
Flanking Amino Acid:
LIMEKALQKEVLLVPGRAFN
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
77
32.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
70
0.45
0.9
69.5
35.5
Minor 5ss
55.9
0.2
2.7
73.7
36.6
Minor BPS
59.8
0.39
1.7
74.89
41.7

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100