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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67381093_67383402_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67381093 - 67383402
Intron Length:
2310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATCA
5'SS Class:
strong_major
3'SS Sequence:
AATTTACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GATAATTTACTT
Flanking Amino Acid:
GEKGFLKHIDRVVEFYKTQQ
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.4
35.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.3
0.66
0.9
75.2
39
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
47.6
-0.1
1.8
63.57
40.7

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100