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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67383465_67384260_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67383465 - 67384260
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTGCTTTATTT
Flanking Amino Acid:
STMHTSTFTQIMISQLLQQW
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
59.8
0.39
1.7
76.04
41.4

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100