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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67385642_67386395_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67385642 - 67386395
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GCAACTTGAATT
Flanking Amino Acid:
DPYYFLQFEKPWAPTFLSMD
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.4
0.66
1
79.3
33
Minor 5ss
45.6
-0.5
2.9
65.6
45.5
Minor BPS
52.2
0.15
1.5
63.2
41.1

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100