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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67386462_67386962_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67386462 - 67386962
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAGC
5'SS Class:
major
3'SS Sequence:
TTAATTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTATTAATT
Flanking Amino Acid:
TAERKKEIYQLARKYDFLII
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.7
41.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.5
0.66
0.8
78.2
36
Minor 5ss
34.4
-1.8
3
45.9
42.2
Minor BPS
66.3
0.59
1.7
84.39
36.6

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100