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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67389736_67390689_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
67389736 - 67390689
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATCTATG
5'SS Class:
weak_major
3'SS Sequence:
ATTCATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGCACCTTATCT
Flanking Amino Acid:
KRALQYSASAGIPELLSWLK
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
65.3
46
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.5
0.64
0.9
74.7
39
Minor 5ss
52
0.07
2.1
59.7
45
Minor BPS
64.1
0.52
1.7
77.62
44.4

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100