About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67390859_67392491_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67390859 - 67392491
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CCTTTTACTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
ARKESPIRLLTELMQRSPPS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77.8
0.63
0.8
70.4
34.9
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100