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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67392561_67393411_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67392561 - 67393411
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGTTG
5'SS Class:
major
3'SS Sequence:
GCTTTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAA
U12 Branch Point Sequence:
TTATGTCCAACT
Flanking Amino Acid:
GCAGCAAAAGDMNYSRFLTT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
66.5
41.6
Major BPS
52.9
0.07
1.4
64.5
42.8
Major PPT
75.7
0.58
0.8
69
31.7
Minor 5ss
34.5
-1.8
3.3
38.1
46.8
Minor BPS
47.5
-0.1
2.2
73.84
42.8

Associated Gene:

Gene:
AADAT
Ensembl Gene ID:
ENSAPLG00000003855
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003994
67377446 - 67394545
17100