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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67407063_67416948_F

Intron Information:

Intron Rank:
148224
Intron Class:
major
Intron Phase:
Intron Coordinates:
67407063 - 67416948
Intron Length:
9886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
CTGGTCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGATGCTGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
69.7
43.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
79
0.65
0.9
72.8
37.5
Minor 5ss
42
-0.9
3.1
49
47.2
Minor BPS
46
-0.4
2.2
53.99
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029819
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029614
67406725 - 67418999
12275