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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67455635_67503861_F

Intron Information:

Intron Rank:
130864
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
67455635 - 67503861
Intron Length:
48227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTCG
5'SS Class:
weak_major
3'SS Sequence:
ATTTTGCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTGCTTCAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.2
65
41.7
Major BPS
80
0.75
1
78.6
31
Major PPT
71.6
0.49
1.1
68.7
41.8
Minor 5ss
57.6
0.26
1.9
68.1
42.9
Minor BPS
50.4
-0.1
2.4
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020268
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043747
67455443 - 67504873
49431