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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67546453_67547278_F

Intron Information:

Intron Rank:
126863
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
67546453 - 67547278
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAG
5'SS Class:
strong_major
3'SS Sequence:
CATGGAAAACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGCTTCTCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.3
36.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
47.8
-0.1
1
35
39
Minor 5ss
43.4
-0.7
2.8
55.2
49
Minor BPS
51
0.03
1.8
63.83
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018348
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018899
67546299 - 67557681
11383
ENSAPLT00000038175
67546299 - 67557681
11383