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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67756528_67794191_F

Intron Information:

Intron Rank:
148096
Intron Class:
major
Intron Phase:
Intron Coordinates:
67756528 - 67794191
Intron Length:
37664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATGCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
0.7
74.5
23.8
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
60.6
0.41
1.7
76.5
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029734
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047755
67756088 - 67823713
67626