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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67778390_67794191_F

Intron Information:

Intron Rank:
148095
Intron Class:
major
Intron Phase:
Intron Coordinates:
67778390 - 67794191
Intron Length:
15802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATGCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.2
0.59
0.7
74.5
23.8
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
60.6
0.41
1.7
76.5
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029734
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038076
67777792 - 67794503
16712