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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67854281_67854570_F

Intron Information:

Intron Rank:
135533
Intron Class:
major
Intron Phase:
Intron Coordinates:
67854281 - 67854570
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTGGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.1
25.6
Major BPS
80
0.75
1
78.6
31
Major PPT
77.7
0.62
1
76
38
Minor 5ss
38.8
-1.3
3
53.7
43.8
Minor BPS
72.7
0.71
1.4
83.14
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022928
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040234
67848476 - 67855151
6676