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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_67885978_68053296_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67885978 - 68053296
Intron Length:
167319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
VKPAEPSEPQTVPLGLGDGQ
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.3
0.73
0.9
76.4
37.5
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
GALNTL6
Ensembl Gene ID:
ENSAPLG00000003678
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003781
67885840 - 68340827
454988