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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6801209_6801285_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6801209 - 6801285
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGCAGGAG
5'SS Class:
weak_major
3'SS Sequence:
CCCAAAACATAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
TCCCCCAAAACA
Flanking Amino Acid:
IQRCFRGNHR
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.1
0.07
1.1
46.5
37.5
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
46.8
-0.1
1.1
43.4
35
Minor 5ss
23.8
-3
3.6
31.3
43.5
Minor BPS
48.6
-0.1
2
61.46
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005203
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044192
6801207 - 7018067
216861