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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68077493_68097291_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68077493 - 68097291
Intron Length:
19799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
GCTTACACAACT
Flanking Amino Acid:
ERSLPDIRHPNCKHKVYLEK
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
49
0.01
2
71.51
44.5

Associated Gene:

Gene:
GALNTL6
Ensembl Gene ID:
ENSAPLG00000003678
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003934
67885840 - 68340827
454988
ENSAPLT00000003781
67885840 - 68340827
454988