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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68402537_68402774_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68402537 - 68402774
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTATTTGATC
Flanking Amino Acid:
IRPFPGPLAQDDKEANRPIP
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
68.7
0.42
1
62.7
42.6
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
63.3
0.4
1.4
72.48
32.2

Associated Gene:

Gene:
GALNT7
Ensembl Gene ID:
ENSAPLG00000003409
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020450
68402435 - 68425413
22979