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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68403233_68418542_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68403233 - 68418542
Intron Length:
15310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCAAA
5'SS Class:
major
3'SS Sequence:
AATCCTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
AATCCTTTTACA
Flanking Amino Acid:
DRSVNDLRQEECKFWHYDEN
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
67.9
39.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
79.7
0.67
0.9
72.7
36.6
Minor 5ss
40
-1.1
2.8
45.1
43.8
Minor BPS
59.9
0.31
1.6
68.46
37.6

Associated Gene:

Gene:
GALNT7
Ensembl Gene ID:
ENSAPLG00000003409
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020450
68402435 - 68425413
22979
ENSAPLT00000003502
68393805 - 68434623
40819
ENSAPLT00000039944
68347445 - 68434623
87179
ENSAPLT00000027096
68393805 - 68434623
40819