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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68418710_68425018_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68418710 - 68425018
Intron Length:
6309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TCTTTGTTATTT
Flanking Amino Acid:
IVLIDDFSNKAHLKERLDDY
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
82
0.72
0.8
76.7
37.2
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
50.3
0.09
2.3
74.56
43.3

Associated Gene:

Gene:
GALNT7
Ensembl Gene ID:
ENSAPLG00000003409
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039944
68347445 - 68434623
87179
ENSAPLT00000027096
68393805 - 68434623
40819
ENSAPLT00000020450
68402435 - 68425413
22979
ENSAPLT00000003502
68393805 - 68434623
40819