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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68427006_68430069_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68427006 - 68430069
Intron Length:
3064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAGAAA
5'SS Class:
major
3'SS Sequence:
ATTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAC
U12 Branch Point Sequence:
TTACACTGTATT
Flanking Amino Acid:
SKRKHKTEPYRSPAMAGGLF
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
68.6
37.8
Major BPS
64
0.35
1
72.7
31.8
Major PPT
87.7
0.85
0.7
85.4
28.6
Minor 5ss
31.4
-2.1
3.2
39.7
46.1
Minor BPS
46.8
-0.1
1.9
68.6
41.9

Associated Gene:

Gene:
GALNT7
Ensembl Gene ID:
ENSAPLG00000003409
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027096
68393805 - 68434623
40819