About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68432124_68433149_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68432124 - 68433149
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTATCT
5'SS Class:
major
3'SS Sequence:
TTCTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTCTTCTTCACA
Flanking Amino Acid:
VYVGSSPTLKNYVRVVEVWW
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.1
37.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87.5
0.84
0.7
83.3
25.2
Minor 5ss
39.6
-1.2
3.3
58
46.1
Minor BPS
68.4
0.57
1.7
78.35
38.8

Associated Gene:

Gene:
GALNT7
Ensembl Gene ID:
ENSAPLG00000003409
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039944
68347445 - 68434623
87179
ENSAPLT00000027096
68393805 - 68434623
40819
ENSAPLT00000003502
68393805 - 68434623
40819