Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68472613_68475075_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

68472613 - 68475075

Intron Length:

2463

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGTCAAA

5'SS Class:

major

3'SS Sequence:

CATTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAGAT

U12 Branch Point Sequence:

CTTCCCTCATTT

Flanking Amino Acid:

SPVQDIDTPEVDLYQLQVNT

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

40.2

Major BPS

70.4

0.51

66.8

39.9

Major PPT

81.3

0.7

0.8

73.8

36.5

Minor 5ss

37.4

-1.4

3.1

48.2

47.6

Minor BPS

53.6

0.19

1.9

73.65

43.4

Associated Gene:

Gene:

SAP30

Ensembl Gene ID:

ENSAPLG00000003274

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018369

68471836 - 68491483

19648

ENSAPLT00000003336

68471836 - 68477351

5516