About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68475175_68477219_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68475175 - 68477219
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TCTTCCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGTTATTTAATT
Flanking Amino Acid:
PGLNKAQLVEIIGCHFRTIP
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
75.7
40.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.1
0.79
0.7
80.9
24.2
Minor 5ss
40
-1.1
3
51
39.8
Minor BPS
67
0.61
1.5
78.55
37.6

Associated Gene:

Gene:
SAP30
Ensembl Gene ID:
ENSAPLG00000003274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003336
68471836 - 68477351
5516