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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68475175_68491156_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68475175 - 68491156
Intron Length:
15982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TTGTGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AAGCCTTTGACC
Flanking Amino Acid:
PGLNKAQLVEDSSEQGCLPG
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
75.7
40.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.6
0.64
1
72.2
42.7
Minor 5ss
40
-1.1
3
51
39.8
Minor BPS
60.7
0.32
1.2
62.19
37.2

Associated Gene:

Gene:
SAP30
Ensembl Gene ID:
ENSAPLG00000003274
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018369
68471836 - 68491483
19648