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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68481009_68482521_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68481009 - 68482521
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATTATTAAAA
Flanking Amino Acid:
CNFKELLCCPKEIFFGPKVS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
78.5
31.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.9
0.56
0.9
70.7
39.9
Minor 5ss
42
-0.9
3.3
55.6
43.2
Minor BPS
58
0.25
1.7
68.11
37.2

Associated Gene:

Gene:
SCRG1
Ensembl Gene ID:
ENSAPLG00000003271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003325
68480856 - 68482785
1930