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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68666219_68672806_F

Intron Information:

Intron Rank:
128500
Intron Class:
major
Intron Phase:
Intron Coordinates:
68666219 - 68672806
Intron Length:
6588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.3
0.79
0.8
77.1
36.8
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019212
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047001
68665944 - 68673206
7263
ENSAPLT00000022553
68657546 - 68673206
15661