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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68672852_68673004_F

Intron Information:

Intron Rank:
128501
Intron Class:
major
Intron Phase:
Intron Coordinates:
68672852 - 68673004
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGCATCTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGCATCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
73
0.57
1
73.6
28.6
Major PPT
78.9
0.65
0.9
72.1
37.9
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
55.3
0.16
1.7
64.39
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019212
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047001
68665944 - 68673206
7263
ENSAPLT00000022553
68657546 - 68673206
15661