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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68689740_68689961_F

Intron Information:

Intron Rank:
145389
Intron Class:
major
Intron Phase:
Intron Coordinates:
68689740 - 68689961
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TCTCCCACCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.4
44.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
67.5
0.39
0.8
59.2
31.3
Minor 5ss
43.4
-0.7
2.9
52.7
46.4
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028378
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042217
68689405 - 68691758
2354