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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68690833_68691685_F

Intron Information:

Intron Rank:
145391
Intron Class:
major
Intron Phase:
Intron Coordinates:
68690833 - 68691685
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCATATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTTATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.1
0.61
0.9
70.2
39.7
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
62
0.46
1.7
78.25
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028378
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042217
68689405 - 68691758
2354