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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68702282_68703919_R

Intron Information:

Intron Rank:
144975
Intron Class:
major
Intron Phase:
Intron Coordinates:
68702282 - 68703919
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCACTCGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTGGCATTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
66.7
0.41
1
57.8
39
Major PPT
76.1
0.59
0.9
72.8
37.2
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
52.7
0.17
2.2
76.77
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025384
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040700
68702270 - 68705317
3048