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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68731287_68733300_R

Intron Information:

Intron Rank:
145764
Intron Class:
major
Intron Phase:
Intron Coordinates:
68731287 - 68733300
Intron Length:
2014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.7
0.8
0.8
77.9
40.2
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
56.2
0.27
1.8
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025816
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045780
68728210 - 68738086
9877
ENSAPLT00000033244
68728210 - 68734148
5939