About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68752205_68754241_F

Intron Information:

Intron Rank:
151327
Intron Class:
major
Intron Phase:
Intron Coordinates:
68752205 - 68754241
Intron Length:
2037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.8
0.85
0.8
85.4
34.1
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
53.5
0.19
2
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031236
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023038
68750148 - 68755960
5813