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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68777431_68781555_F

Intron Information:

Intron Rank:
148228
Intron Class:
major
Intron Phase:
Intron Coordinates:
68777431 - 68781555
Intron Length:
4125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTATTATGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.8
0.38
1.1
63.6
42.1
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
55.4
0.17
1.8
70.42
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029820
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039211
68777130 - 68785126
7997