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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68781639_68785010_F

Intron Information:

Intron Rank:
148229
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
68781639 - 68785010
Intron Length:
3372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTAT
5'SS Class:
weak_major
3'SS Sequence:
TGTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
ATATATCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.2
68.3
39.1
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
82.9
0.74
0.7
81.3
30.7
Minor 5ss
50.2
0.01
2.9
72.7
44.5
Minor BPS
47.3
-0.1
2
69.78
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029820
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039211
68777130 - 68785126
7997