About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68801104_68801716_F

Intron Information:

Intron Rank:
139545
Intron Class:
major
Intron Phase:
Intron Coordinates:
68801104 - 68801716
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82
0.72
0.8
72.9
37
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025035
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022794
68800437 - 68802078
1642