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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68819548_68822411_R

Intron Information:

Intron Rank:
133941
Intron Class:
major
Intron Phase:
Intron Coordinates:
68819548 - 68822411
Intron Length:
2864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
GGTCTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAAAACTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
71.7
0.49
0.9
62.9
43
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
50.6
0.01
1.9
63.72
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019334
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027438
68819500 - 68823745
4246