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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68819548_68823604_R

Intron Information:

Intron Rank:
133940
Intron Class:
major
Intron Phase:
Intron Coordinates:
68819548 - 68823604
Intron Length:
4057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGTTT
5'SS Class:
major
3'SS Sequence:
GGTCTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAAAACTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.6
36.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
71.7
0.49
0.9
62.9
43
Minor 5ss
35.8
-1.6
3.7
54.5
49.7
Minor BPS
50.6
0.01
1.9
63.72
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019334
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019797
68813720 - 68823745
10026