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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68822525_68823604_R

Intron Information:

Intron Rank:
133942
Intron Class:
major
Intron Phase:
Intron Coordinates:
68822525 - 68823604
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGTTT
5'SS Class:
major
3'SS Sequence:
TCCACCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.6
36.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
73
0.52
0.8
65.7
30.1
Minor 5ss
35.8
-1.6
3.7
54.5
49.7
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019334
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027438
68819500 - 68823745
4246