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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68874387_68875038_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68874387 - 68875038
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTGTCTCAACA
Flanking Amino Acid:
LNYPRDVDYTMLVKGDPTSF
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.8
0.49
1
66.5
39.5
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
61.7
0.36
1.7
72
40

Associated Gene:

Gene:
CEP44
Ensembl Gene ID:
ENSAPLG00000003165
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003226
68874237 - 68885691
11455