About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68876292_68877520_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68876292 - 68877520
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTAATC
5'SS Class:
major
3'SS Sequence:
TTTCAATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CCCTTTTCAATT
Flanking Amino Acid:
KHKELSNLNKVKSQMRKKLR
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72
37.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.1
0.5
1.1
72.3
36.7
Minor 5ss
37
-1.5
3.2
52.5
44.2
Minor BPS
51.3
0.12
1.5
62.38
43.1

Associated Gene:

Gene:
CEP44
Ensembl Gene ID:
ENSAPLG00000003165
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003226
68874237 - 68885691
11455