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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68877629_68879230_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
68877629 - 68879230
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
ACATGCTCAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
PNGSAVNSKQVPQVERHSGS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
50.4
0.01
1.1
49.8
37.7
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
CEP44
Ensembl Gene ID:
ENSAPLG00000003165
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003226
68874237 - 68885691
11455