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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68884812_68885072_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68884812 - 68885072
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAT
Flanking Amino Acid:
NSHGLTDISKETTRERMERI
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.6
0.71
0.9
75.2
38.3
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
65.2
0.56
1.4
78.07
38.3

Associated Gene:

Gene:
CEP44
Ensembl Gene ID:
ENSAPLG00000003165
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003226
68874237 - 68885691
11455