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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6890431_6891396_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6890431 - 6891396
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGATCT
5'SS Class:
major
3'SS Sequence:
GCTTTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GCTTCACTAACA
Flanking Amino Acid:
LRGNEKQPQEEPFVMVSEN
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
74
30.3
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
73.7
0.53
0.9
69.3
36.9
Minor 5ss
36.8
-1.5
3.2
49.1
41
Minor BPS
56.3
0.19
2
70.45
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005203
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005363
6890404 - 7018067
127664