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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68921993_68925827_F

Intron Information:

Intron Rank:
124110
Intron Class:
major
Intron Phase:
Intron Coordinates:
68921993 - 68925827
Intron Length:
3835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCTGACGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.7
0.89
0.6
88.3
21.4
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
48.6
-0.1
2
64.8
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016903
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039808
68921793 - 68927607
5815