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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68946415_68947498_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68946415 - 68947498
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGATTCTTAAAT
Flanking Amino Acid:
KNMMQFYGVMDPSIIAEGLI
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
67.9
39.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.7
0.78
0.9
90.3
22.7
Minor 5ss
34.8
-1.7
2.9
37.7
40.9
Minor BPS
68.6
0.66
1.4
77.47
38.1

Associated Gene:

Gene:
HPGD
Ensembl Gene ID:
ENSAPLG00000002860
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002918
68945805 - 68972065
26261