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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68947663_68949460_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68947663 - 68949460
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AATACCTAACCT
Flanking Amino Acid:
GVIGFTRSIALAANIENYGV
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.9
0.74
0.7
76.4
32.3
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
51.6
0.13
2
72.43
44

Associated Gene:

Gene:
HPGD
Ensembl Gene ID:
ENSAPLG00000002860
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002918
68945805 - 68972065
26261