About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68957549_68967641_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68957549 - 68967641
Intron Length:
10093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTATGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATATTTTGAATA
Flanking Amino Acid:
DWESTIQINLTSVIRGTYLG
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.3
0.43
1
68.7
35.9
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
60.2
0.32
1.3
66.93
33.2

Associated Gene:

Gene:
HPGD
Ensembl Gene ID:
ENSAPLG00000002860
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002918
68945805 - 68972065
26261