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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_68967749_68971742_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68967749 - 68971742
Intron Length:
3994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
GATTTTACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTCCATAAGT
Flanking Amino Acid:
CDVTDPEQLKGAFKKVIEHF
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
73.2
0.52
0.9
66.9
39
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
71.9
0.76
1.9
93.11
35.2

Associated Gene:

Gene:
HPGD
Ensembl Gene ID:
ENSAPLG00000002860
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002918
68945805 - 68972065
26261